Welcome to THRice GDVis

An interactive report for genetic diversity and population structure analysis of nation-wide rice in Thailand.

Thai Rice Genetic Diversity Logo

About the Research

Rice Department researchers and colleagues performed analysis of Genotyping-By-Sequencing data for 300 rice accessions selected from across four regions in Thailand to investigate genetic diversity and population structure in Thai rice germplasm.

Visualization Tools

Explore variants called against the Nipponbare IRGSP-1.0 reference genome and inferred subpopulations identified using PCA, ADMIXTURE, and Phylogenetic tree analysis.

PCA Analysis
ADMIXTURE
Phylogenetic Tree
300 Accessions