Thai Rice Genetic Diversity Visualization

An interactive report for genetic diversity and population structure analysis of nation-wide rice in Thailand.

Rice Department researchers and colleagues performed analysis of Genotyping-By-Sequencing data for 300 rice accessions selected from across four regions in Thailand to investigate genetic diversity and population structure in Thai rice germplasm. This interactive report provides visualization tools to explore variants called against the Nipponbare IRGSP-1.0 reference genome and inferred subpopulations that were identified in the dataset using PCA, ADMIXTURE and Phylogenetic tree